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· Introduction
Workbench
Massively Scalable On-Demand Compute
Comprehensive Toolkit
Reliable and Reproducible
02
· Built for developers, trusted by enterprises
More than just workflows
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Built for Scale
Stop wrestling with infrastructure and tap into a massively scalable on-demand compute infrastructure to run computational pipelines easily.
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Beyond Data Processing
Running a workflow is just the tip of the iceberg. Do more than just workflows with a suite of visualization, data interpretation, and tertiary analysis tools to give meaning to your data.
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Data Exploration & Interpretation
Fully connected analytics taps into the massive collection of data indexed in the platform. Explore your data with rich context and find the needle in the haystack.
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Intuitive
Experience an expressive and intuitive interface that keeps things simple and easy to use, meaning your team can spend less time reading docs, and more time getting stuff done.
Workflows
Everything you need to turn data into discoveries. Choose for a growing collection of pre-built, configurable workflows to fast track research
Single Cell
Cell Ranger
Set of analysis pipelines that process Chromium single cell data to align reads and generate barcode matrices.
Single Cell
Seurat
R-wrapper of Seurat toolkit. Used to QC scRNA data and perform data exploration of single cell data.
Transcriptomics
DESeq2
Performs differential expression against two groups of samples
Read Alignment
Kallisto
Quantify abundances of transcripts from bulk RNAseq data using pseudo-alignment
Read Alignment
STAR
This workflow maps single-end or paired-end FASTQ reads to a reference genome using the STAR (v2.7.0f) aligner.
Read Alignment
BWA
This workflow maps paired FASTQ reads to a reference genome using the Burrows-Wheeler Aligner.
Functional Genomics
Deep Variant
DeepVariant is a deep learning-based variant caller that takes aligned reads, produces pileup image tensors from them, classifies each tensor using a convolutional neural network.
Functional Genomics
Mutect2
This workflow primarily uses the Genome Analysis Toolkit (GATK v4.1.7.0) to recalibrate the base positions, determine somatic single nucleotide variants and indels via local assembly of haplotypes, and then filter those calls through GATK MuTect2 Filter function.
Functional Genomics
Control FREEC
This workflow takes in an input bam file and runs it through the Control-FREEC workflow to call copy number variations.
Transcriptomics
GSEA
Gene Set Enrichment Analysis is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states.
Epigenomics
MACS2
This workflow is used to call peaks in ChIP data files.
Custom Workflow
